snipar.errors module

snipar.errors.count_ME(gts, pair_indices)[source]
snipar.errors.estimate_genotyping_error_rate(ped, bedfiles=None, bgenfiles=None, min_maf=0.01)[source]
class snipar.errors.g_error(error_ests, ME, sum_het, sid)[source]

Bases: object

bayes_shrink(alpha, beta)[source]
snipar.errors.mendelian_errors(ped, bedfile=None, bgenfile=None, min_maf=0.01)[source]