snipar.tests package

Submodules

• snipar.tests.imputation_diagnostic module
• snipar.tests.test_example module
  • TestExample
    • TestExample.test_example()
• snipar.tests.test_imputation module
  • imputation_test()
• snipar.tests.test_impute module
  • TestImpute
    • TestImpute.test_impute_with_phased_pedigree_chunks_control()
    • TestImpute.test_impute_with_phased_pedigree_control()
    • TestImpute.test_impute_with_unphased_king()
    • TestImpute.test_impute_with_unphased_king_control()
    • TestImpute.test_impute_with_unphased_king_control_legacy_ibd()
    • TestImpute.test_impute_with_unphased_king_control_legacy_tilda_ibd()
    • TestImpute.test_impute_with_unphased_king_control_pca()
    • TestImpute.test_impute_with_unphased_pedigree()
    • TestImpute.test_impute_with_unphased_pedigree_chunks_control()
    • TestImpute.test_impute_with_unphased_pedigree_control()
    • TestImpute.test_impute_with_unphased_pedigree_control_backup()
    • TestImpute.test_impute_with_unphased_pedigree_control_legacy_ibd()
    • TestImpute.test_impute_with_unphased_pedigree_control_multiprocess()
    • TestImpute.test_impute_with_unphased_pedigree_control_nothread()
    • TestImpute.test_impute_with_unphased_pedigree_control_notilda()
    • TestImpute.test_impute_with_unphased_pedigree_wild_ibd_control()
• snipar.tests.test_impute_from_sibs module
  • TestSibImpute
    • TestSibImpute.test_dict_to_cmap()
    • TestSibImpute.test_get_IBD()
    • TestSibImpute.test_get_IBD_type()
    • TestSibImpute.test_impute_snp_from_offsprings_unphased()
• snipar.tests.test_manhattan module
  • imputation_test()
• snipar.tests.test_pedigree_creation module
  • TestPedigree
    • TestPedigree.test_add_control()
    • TestPedigree.test_create_pedigree()
  • create_graph_from_pedigree()
  • node_match()
• snipar.tests.test_sibreg module
  • Sigma_make()
  • random_design()
  • safe_alpha_mle()
  • safe_likelihood()
  • test_regrnd_functions
• snipar.tests.utils module
  • SniparTest
    • SniparTest.log
    • SniparTest.p_value_threshold
    • SniparTest.setUp()
    • SniparTest.setUpClass()
    • SniparTest.subsample_snp
    • SniparTest.tearDown()
    • SniparTest.tearDownClass()

Module contents